Research papers

  • Nuñez H, Moya-Beltrán A, Covarrubias PC, Issotta F, Cárdenas JP, González M, Atavales J, Acuña LG, Johnson DB and Quatrini R. Molecular Systematics of the Genus Acidithiobacillus: Insights into the Phylogenetic Structure and Diversification of the Taxon. Front. Microbiol. 8:30 (2017). | ABSTRACT | ARTICLE |  PDF
  • Cardenas JP, Quatrini R, Holmes DS. Aerobic Lineage of the Oxidative Stress Response Protein Rubrerythrin Emerged in an Ancient Microaerobic, (Hyper)Thermophilic Environment. Front Microbiol. Nov 18;7:1822 (2016). | ABSTRACT | ARTICLE |  PDF
  • Cárdenas JP, Quatrini R, Holmes DS. Genomic and metagenomic challenges and opportunities for bioleaching: a mini-review. Res Microbiol. Sep;167(7):529-38 (2016). | ABSTRACT | ARTICLE |  PDF
  • Nuñez H, Covarrubias PC, Moya-Beltrán A, Issotta F, Atavales J, Acuña LG, Johnson DB, Quatrini R. Detection, identification and typing of Acidithiobacillus species and strains: a review. Res Microbiol. Sep;167(7):555-67 (2016). | ABSTRACT | ARTICLE |  PDF
  • Issotta F, Galleguillos PA, Moya-Beltrán A, Davis-Belmar CS, Rautenbach G, Covarrubias PC, Acosta M, Ossandon FJ, Contador Y, Holmes DS, Marín-Eliantonio S, Quatrini R, Demergasso C. Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile. Stand Genomic Sci. 27; 11 – 19. (2016). | ABSTRACT | ARTICLE |  PDF
  • Ossandon FJ, Cárdenas JP, Corbett M, Quatrini R, Holmes DS, Watkin E. Draft Genome Sequence of the Iron-Oxidizing, Acidophilic, and Halotolerant “Thiobacillus prosperus” Type Strain DSM 5130Genome Announc. 2; 5. (2014).  | ABSTRACT | ARTICLE |  PDF
  • Nuñez H, Loyola D, Cárdenas JP, Holmes DS, Johnson DB, Quatrini R. Multi Locus Sequence Typing scheme for Acidithiobacillus caldus strain evaluation and differentiation. Res. Microbiol. S0923-2508, 116-118 (2014). | ABSTRACT | ARTICLE |  PDF
  • González C, Yanquepe M, Cardenas JP, Valdes J, Quatrini R, Holmes DS, Dopson M. Genetic variability of psychrotolerant Acidithiobacillus ferrivorans revealed by (meta)genomic analysis. Res Microbiol. 9; 726-734 (2014). | ABSTRACT | ARTICLE |  PDF
  • Moya-Beltrán A, Cárdenas JP, Covarrubias PC, Issotta F, Ossandon FJ, Grail BM, Holmes DS, Quatrini R, Johnson DB. Draft Genome Sequence of the Nominated Type Strain of “Ferrovum myxofaciens,” an Acidophilic, Iron-Oxidizing Betaproteobacterium. Genome Announc. 2, e00834-14 (2014). | ABSTRACT | ARTICLE |  PDF
  • Arenas-Salinas M, Ortega-Salazar S, Gonzales-Nilo F, Pohl E, Holmes DS, Quatrini R. AFAL: a web service for profiling amino acids surrounding ligands in proteins. Comput. Aided. Mol. Des. 28, 1069-1076. (2014). | ABSTRACT | ARTICLE |  PDF
  • Molina-Quiroz RC, Loyola DE, Muñoz-Villagrán CM, Quatrini R, Vásquez CC, Pérez-Donoso JM. DNA, cell wall and general oxidative damage underlie the tellurite/cefotaxime synergistic effect in Escherichia coliPLoS One. 11; e79499 (2013). | ABSTRACT | ARTICLE |  PDF
  • Acuña LG, Cárdenas JP, Covarrubias PC, Haristoy JJ, Flores R, Nuñez H, Riadi G, Shmaryahu A, Valdés J, Dopson M, Rawlings DE, Banfield JF, Holmes DS, Quatrini R. Architecture and Gene Repertoire of the Flexible Genome of the Extreme Acidophile Acidithiobacillus caldus. PLoS One. 8, e78237 (2013). | ABSTRACT | ARTICLE |  PDF
  • Bustamante P, Covarrubias P, Levicán G, Katz A, Tapia P, Bonnefoy V, Holmes DS, Quatrini R, Orellana O. ICEAfe1, an actively excising integrative-conjugative element from the biomining bacterium Acidithiobacillus ferrooxidans. J Mol Microbiol Biotechnol. 6; 399-407 (2013). | ABSTRACT | ARTICLE |  PDF
  • Tapia P, Flores FM, Covarrubias PC, Acuña LG, Holmes DS, Quatrini R. Complete Genome Sequence of Temperate Bacteriophage AcaML1 from the Extreme Acidophile Acidithiobacillus caldus ATCC 51756. Virol. 86, 12452-12453 (2012). | ABSTRACT | ARTICLE |  PDF
  • Norambuena J, Flores R, Cárdenas JP, Quatrini R, Chávez R, Levicán G. Thiol/Disulfide system plays a crucial role in redox protection in the acidophilic iron-oxidizing bacterium Leptospirillum ferriphilumPLoS One. 9; e44576 (2012). | ABSTRACT | ARTICLE |  PDF
  • Valdes J, Ossandon F, Quatrini R, Dopson M, Holmes DS. Draft genome sequence of the extremely acidophilic biomining bacterium Acidithiobacillus thiooxidans ATCC 19377 provides insights into the evolution of the Acidithiobacillus genusJ Bacteriol. 24; 7003-7004 (2012). | ABSTRACT | ARTICLE |  PDF
  • Cárdenas JP, Valdés J, Quatrini R, Duarte F, Holmes DS. Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganismsAppl Microbiol Biotechnol.3; 605-620 (2010). | ABSTRACT | ARTICLE |  PDF
  • Quatrini R, Appia-Ayme C, Denis Y, Jedlicki E, Holmes DS, Bonnefoy V. Extending the models for iron and sulfur oxidation in the extreme acidophile Acidithiobacillus ferrooxidansBMC Genomics. 10; 394 (2009). | ABSTRACT | ARTICLE |  PDF
  • Valdes J, Quatrini R, Hallberg K, Dopson M, Valenzuela PD, Holmes DS. Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the genus AcidithiobacillusJ Bacteriol. 18; 5877-5878 (2009). | ABSTRACT | ARTICLE |  PDF
  • Nieto PA, Covarrubias PC, Jedlicki E, Holmes DS, Quatrini R. Selection and evaluation of reference genes for improved interrogation of microbial transcriptomes: case study with the extremophile Acidithiobacillus ferrooxidansBMC Mol Biol. 10; 63 (2009). | ABSTRACT | ARTICLE |  PDF
  • Osorio H., Martínez V., Veloso F. A., Pedroso I., Valdés J., Jedlicki E., Holmes D. S. and Quatrini R. Iron homeostasis strategies in acidophilic iron oxidizers: Studies in Acidithiobacillus and Leptospirillum. Hydrometallurgy 94, 175–179 (2008).
  • Quatrini R., Appia-Ayme C., Denis Y., Ratouchniak J., Veloso F., Valdes J., Lefimil C., Silver S., Roberto F., Orellana O., Denizot F., Jedlicki E., Holmes D. and Bonnefoy V. Insights into the iron and sulfur energetic metabolism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling. Hydrometallurgy 83, 263–272 (2006).
  • Quatrini R., Jedlicki E. and Holmes D. S. Genomic insights into the iron uptake mechanisms of the biomining microorganism Acidithiobacillus ferrooxidans. J. Ind. Microbiol. Biotechnol. 32, 606–614 (2005).
  • Quatrini R., Lefimil C., Holmes D. S. and Jedlicki E. The ferric iron uptake regulator (Fur) from the extreme acidophile Acidithiobacillus ferrooxidans. Microbiology 151, 2005–2015 (2005).
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